IL_8BQD_037

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_037 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.1931

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8BQD|1|2|A|746
8BQD|1|2|C|747
*
8BQD|1|2|G|802
8BQD|1|2|A|803
8BQD|1|2|A|804
8BQD|1|2|U|805

Current chains

Chain 2

18S rRNA

Nearby chains

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain b

RPS22A isoform 1

Chain c

40S ribosomal protein S23-A