IL_8BQD_040

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_040 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1534

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8BQD|1|2|A|865
8BQD|1|2|G|866
*
8BQD|1|2|C|962
8BQD|1|2|A|963
8BQD|1|2|U|964
8BQD|1|2|U|965

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S13

Chain b

RPS22A isoform 1

Chain f

40S ribosomal protein S27-A