IL_8BQD_048
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8BQD|1|2|C|1096, 8BQD|1|2|U|1098, 8BQD|1|2|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_048 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1612
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|2|C|1034
8BQD|1|2|G|1035
8BQD|1|2|A|1036
*
8BQD|1|2|U|1095
8BQD|1|2|C|1096
8BQD|1|2|U|1097
8BQD|1|2|U|1098
8BQD|1|2|U|1099
8BQD|1|2|G|1100
8BQD|1|2|G|1101
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain R
- RPS2 isoform 1
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- RPS22A isoform 1
- Chain c
- 40S ribosomal protein S23-A
- Chain f
- 40S ribosomal protein S27-A
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