IL_8BQD_051

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_051 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1145

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8BQD|1|2|G|1111
8BQD|1|2|G|1112
8BQD|1|2|A|1113
8BQD|1|2|G|1114
8BQD|1|2|U|1115
8BQD|1|2|A|1116
8BQD|1|2|U|1117
8BQD|1|2|G|1118
*
8BQD|1|2|U|1129
8BQD|1|2|G|1130
8BQD|1|2|A|1131
8BQD|1|2|A|1132
8BQD|1|2|A|1133
8BQD|1|2|C|1134

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

60S ribosomal protein L41

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain c

40S ribosomal protein S23-A