IL_8BQD_064

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8BQD|1|2|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_064 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2783

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BQD|1|2|C|1280
8BQD|1|2|G|1281
*
8BQD|1|2|C|1426
8BQD|1|2|A|1427
8BQD|1|2|G|1428

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

RPS3 isoform 1

Chain F

40S ribosomal protein S16-A

Chain J

RPS20 isoform 1

Chain M

RPS29A isoform 1

Chain R

RPS2 isoform 1