IL_8BQD_068

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8BQD|1|2|A|1346, 8BQD|1|2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_068 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1971

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8BQD|1|2|A|1345
8BQD|1|2|A|1346
8BQD|1|2|U|1347
8BQD|1|2|A|1348
*
8BQD|1|2|U|1377
8BQD|1|2|U|1378
8BQD|1|2|C|1379
8BQD|1|2|U|1380

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain J

RPS20 isoform 1