IL_8BQD_069

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_069 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.4626

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8BQD|1|2|G|1352
8BQD|1|2|U|1353
8BQD|1|2|G|1354
*
8BQD|1|2|U|1369
8BQD|1|2|U|1370
8BQD|1|2|A|1371
8BQD|1|2|U|1372
8BQD|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain I

40S ribosomal protein S19-A

Chain J

RPS20 isoform 1