IL_8BQD_070
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_070 not in the Motif Atlas
- Homologous match to IL_8C3A_465
- Geometric discrepancy: 0.1493
- The information below is about IL_8C3A_465
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76236.1
- Basepair signature
- cWW-tWH-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|2|C|1389
8BQD|1|2|U|1390
8BQD|1|2|A|1391
*
8BQD|1|2|U|1407
8BQD|1|2|G|1408
8BQD|1|2|G|1409
8BQD|1|2|A|1410
8BQD|1|2|A|1411
8BQD|1|2|G|1412
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- Rps5p
- Chain F
- 40S ribosomal protein S16-A
- Chain G
- 40S ribosomal protein S17-A
- Chain O
- Guanine nucleotide-binding protein subunit beta-like protein
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