IL_8BQD_076

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_076 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.1258

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BQD|1|2|G|1638
8BQD|1|2|C|1639
8BQD|1|2|C|1640
8BQD|1|2|C|1641
*
8BQD|1|2|G|1760
8BQD|1|2|U|1761
8BQD|1|2|A|1762
8BQD|1|2|A|1763
8BQD|1|2|C|1764

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

60S ribosomal protein L41

Chain BQ

Large subunit ribosomal RNA; LSU rRNA