3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAU*AGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BQD_080 not in the Motif Atlas
Homologous match to IL_4V88_468
Geometric discrepancy: 0.1194
The information below is about IL_4V88_468
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.12
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
35

Unit IDs

8BQD|1|2|C|1653
8BQD|1|2|G|1654
8BQD|1|2|A|1655
8BQD|1|2|U|1656
*
8BQD|1|2|A|1744
8BQD|1|2|G|1745
8BQD|1|2|A|1746
8BQD|1|2|G|1747

Current chains

Chain 2
18S rRNA

Nearby chains

Chain AB
60S ribosomal protein L23-A
Chain AS
60S ribosomal protein L41
Chain BQ
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.0646 s