IL_8BQD_080
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_080 not in the Motif Atlas
- Homologous match to IL_4V88_468
- Geometric discrepancy: 0.1194
- The information below is about IL_4V88_468
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8BQD|1|2|C|1653
8BQD|1|2|G|1654
8BQD|1|2|A|1655
8BQD|1|2|U|1656
*
8BQD|1|2|A|1744
8BQD|1|2|G|1745
8BQD|1|2|A|1746
8BQD|1|2|G|1747
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain AS
- 60S ribosomal protein L41
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: