3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGAG*CAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BQD_083 not in the Motif Atlas
Homologous match to IL_4V88_471
Geometric discrepancy: 0.2053
The information below is about IL_4V88_471
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.12
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
35

Unit IDs

8BQD|1|2|U|1669
8BQD|1|2|G|1670
8BQD|1|2|A|1671
8BQD|1|2|G|1672
*
8BQD|1|2|C|1729
8BQD|1|2|A|1730
8BQD|1|2|A|1731
8BQD|1|2|A|1732

Current chains

Chain 2
18S rRNA

Nearby chains

Chain AE
60S ribosomal protein L24-A
Chain BQ
Large subunit ribosomal RNA; LSU rRNA
Chain T
40S ribosomal protein S6-A
Chain V
40S ribosomal protein S8-B

Coloring options:


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