IL_8BQD_113
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_113 not in the Motif Atlas
- Homologous match to IL_8C3A_025
- Geometric discrepancy: 0.0958
- The information below is about IL_8C3A_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07235.3
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8BQD|1|BQ|G|725
8BQD|1|BQ|G|726
8BQD|1|BQ|G|727
8BQD|1|BQ|G|728
*
8BQD|1|BQ|U|741
8BQD|1|BQ|G|742
8BQD|1|BQ|C|743
8BQD|1|BQ|A|744
8BQD|1|BQ|C|745
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
Coloring options: