IL_8BQD_119

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_119 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0984

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8BQD|1|BQ|U|834
8BQD|1|BQ|G|835
8BQD|1|BQ|A|836
8BQD|1|BQ|A|837
8BQD|1|BQ|G|838
*
8BQD|1|BQ|U|855
8BQD|1|BQ|G|856
8BQD|1|BQ|G|857
8BQD|1|BQ|A|858
8BQD|1|BQ|G|859

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A

Chain BF

60S ribosomal protein L19-A