IL_8BQD_129
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8BQD|1|BQ|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_129 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.1126
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8BQD|1|BQ|G|999
8BQD|1|BQ|C|1000
8BQD|1|BQ|G|1001
8BQD|1|BQ|A|1002
8BQD|1|BQ|A|1003
8BQD|1|BQ|U|1004
*
8BQD|1|BQ|A|1046
8BQD|1|BQ|A|1047
8BQD|1|BQ|A|1048
8BQD|1|BQ|C|1049
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain BD
- RPL10 isoform 1
- Chain BI
- RPL5 isoform 1
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
Coloring options: