IL_8BQD_140

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACACCACAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

8BQD|1|BQ|C|1196, 8BQD|1|BQ|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_140 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1003

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BQD|1|BQ|G|1194
8BQD|1|BQ|A|1195
8BQD|1|BQ|C|1196
8BQD|1|BQ|A|1197
8BQD|1|BQ|C|1198
8BQD|1|BQ|C|1199
8BQD|1|BQ|A|1200
8BQD|1|BQ|C|1201
8BQD|1|BQ|A|1202
8BQD|1|BQ|A|1203
8BQD|1|BQ|A|1204
8BQD|1|BQ|A|1205
*
8BQD|1|BQ|U|1299
8BQD|1|BQ|G|1300
8BQD|1|BQ|A|1301
8BQD|1|BQ|A|1302
8BQD|1|BQ|A|1303
8BQD|1|BQ|A|1304
8BQD|1|BQ|U|1305
8BQD|1|BQ|G|1306
8BQD|1|BQ|G|1307
8BQD|1|BQ|A|1308
8BQD|1|BQ|U|1309
8BQD|1|BQ|G|1310
8BQD|1|BQ|G|1311
8BQD|1|BQ|C|1312
8BQD|1|BQ|G|1313
8BQD|1|BQ|C|1314

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AO

60S ribosomal protein L40-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3

Chain BD

RPL10 isoform 1

Chain BK

60S ribosomal protein L33-A

Chain BO

60S ribosomal protein L7-A

Chain BR

5S ribosomal RNA; 5S rRNA