IL_8BQD_147
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8BQD|1|BQ|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_147 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0878
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8BQD|1|BQ|U|1388
8BQD|1|BQ|G|1389
8BQD|1|BQ|A|1390
8BQD|1|BQ|C|1391
8BQD|1|BQ|G|1392
8BQD|1|BQ|A|1393
8BQD|1|BQ|A|1394
8BQD|1|BQ|G|1395
*
8BQD|1|BQ|U|1415
8BQD|1|BQ|C|1416
8BQD|1|BQ|G|1417
8BQD|1|BQ|A|1418
8BQD|1|BQ|A|1419
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AK
- 60S ribosomal protein L26-A
- Chain AX
- 60S ribosomal protein L17-A
- Chain BE
- RPL4A isoform 1
- Chain BG
- RPL32 isoform 1
- Chain BM
- 60S ribosomal protein L6-B
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: