IL_8BQD_159

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8BQD|1|BQ|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_159 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0956

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8BQD|1|BQ|U|1694
8BQD|1|BQ|U|1695
8BQD|1|BQ|A|1696
8BQD|1|BQ|A|1697
8BQD|1|BQ|C|1698
*
8BQD|1|BQ|G|1747
8BQD|1|BQ|G|1748
8BQD|1|BQ|A|1749
8BQD|1|BQ|A|1750
8BQD|1|BQ|G|1751
8BQD|1|BQ|A|1752

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AI

RPL38 isoform 1

Chain BN

60S ribosomal protein L34-A