IL_8BQD_160

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_160 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1628

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8BQD|1|BQ|U|1702
8BQD|1|BQ|U|1703
8BQD|1|BQ|A|1704
8BQD|1|BQ|U|1705
8BQD|1|BQ|C|1706
8BQD|1|BQ|A|1707
*
8BQD|1|BQ|U|1737
8BQD|1|BQ|C|1738
8BQD|1|BQ|U|1739
8BQD|1|BQ|U|1740
8BQD|1|BQ|A|1741
8BQD|1|BQ|U|1742
8BQD|1|BQ|G|1743

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BN

60S ribosomal protein L34-A