IL_8BQD_166
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8BQD|1|BQ|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_166 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1135
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BQD|1|BQ|C|1918
8BQD|1|BQ|G|1919
8BQD|1|BQ|U|1920
8BQD|1|BQ|A|1921
8BQD|1|BQ|A|1922
8BQD|1|BQ|C|1923
*
8BQD|1|BQ|G|1928
8BQD|1|BQ|G|1929
8BQD|1|BQ|A|1930
8BQD|1|BQ|U|1931
8BQD|1|BQ|A|1932
8BQD|1|BQ|A|1933
8BQD|1|BQ|G|1934
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AS
- 60S ribosomal protein L41
- Chain AT
- 60S ribosomal protein L43-A
- Chain BF
- 60S ribosomal protein L19-A
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