IL_8BQD_182

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_182 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.108

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8BQD|1|BQ|U|2211
8BQD|1|BQ|C|2212
8BQD|1|BQ|A|2213
8BQD|1|BQ|A|2214
8BQD|1|BQ|A|2215
8BQD|1|BQ|G|2216
8BQD|1|BQ|U|2217
*
8BQD|1|BQ|A|2228
8BQD|1|BQ|A|2229
8BQD|1|BQ|C|2230
8BQD|1|BQ|C|2231
8BQD|1|BQ|A|2232
8BQD|1|BQ|A|2233
8BQD|1|BQ|G|2234

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AC

60S ribosomal protein L36-A

Chain BT

60S ribosomal protein L1-A