3D structure

PDB id
8BQD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCAAAUGCCUCG*CGCG
Length
16 nucleotides
Bulged bases
8BQD|1|BQ|A|2281, 8BQD|1|BQ|C|2287, 8BQD|1|BQ|C|2306
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BQD_184 not in the Motif Atlas
Geometric match to IL_5TBW_090
Geometric discrepancy: 0.137
The information below is about IL_5TBW_090
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_66080.1
Basepair signature
cWW-cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

8BQD|1|BQ|C|2277
8BQD|1|BQ|C|2278
8BQD|1|BQ|A|2279
8BQD|1|BQ|A|2280
8BQD|1|BQ|A|2281
8BQD|1|BQ|U|2282
8BQD|1|BQ|G|2283
8BQD|1|BQ|C|2284
8BQD|1|BQ|C|2285
8BQD|1|BQ|U|2286
8BQD|1|BQ|C|2287
8BQD|1|BQ|G|2288
*
8BQD|1|BQ|C|2304
8BQD|1|BQ|G|2305
8BQD|1|BQ|C|2306
8BQD|1|BQ|G|2307

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain AS
60S ribosomal protein L41

Coloring options:


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