IL_8BQD_215

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8BQD|1|BQ|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_215 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.114

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8BQD|1|BQ|A|3103
8BQD|1|BQ|U|3104
8BQD|1|BQ|U|3105
8BQD|1|BQ|A|3106
8BQD|1|BQ|U|3107
*
8BQD|1|BQ|A|3127
8BQD|1|BQ|G|3128
8BQD|1|BQ|A|3129
8BQD|1|BQ|A|3130
8BQD|1|BQ|U|3131

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

RPL9A isoform 1

Chain AO

60S ribosomal protein L40-A

Chain AU

60S ribosomal protein L16-A