IL_8BQD_229

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8BQD|1|BQ|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_229 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0845

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

8BQD|1|BQ|U|3332
8BQD|1|BQ|G|3333
8BQD|1|BQ|U|3334
8BQD|1|BQ|A|3335
8BQD|1|BQ|A|3336
8BQD|1|BQ|G|3337
*
8BQD|1|BQ|C|3367
8BQD|1|BQ|U|3368
8BQD|1|BQ|G|3369
8BQD|1|BQ|A|3370
8BQD|1|BQ|G|3371

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A