IL_8BQD_231

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_231 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.144

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8BQD|1|BQ|A|3342
8BQD|1|BQ|G|3343
8BQD|1|BQ|A|3344
8BQD|1|BQ|G|3345
*
8BQD|1|BQ|C|3360
8BQD|1|BQ|G|3361
8BQD|1|BQ|A|3362
8BQD|1|BQ|U|3363

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BL

60S ribosomal protein L22-A

Chain V

40S ribosomal protein S8-B