IL_8BQX_003

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8BQX|1|2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_003 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1614

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8BQX|1|2|U|37
8BQX|1|2|C|38
8BQX|1|2|A|39
8BQX|1|2|A|40
8BQX|1|2|A|41
*
8BQX|1|2|U|466
8BQX|1|2|G|467
8BQX|1|2|A|468
8BQX|1|2|C|469
8BQX|1|2|A|470
8BQX|1|2|A|471

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A