IL_8BQX_011

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

8BQX|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2288

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

8BQX|1|2|U|144
8BQX|1|2|A|145
8BQX|1|2|U|146
8BQX|1|2|A|147
8BQX|1|2|A|148
8BQX|1|2|C|149
*
8BQX|1|2|G|165
8BQX|1|2|C|166
8BQX|1|2|U|167
8BQX|1|2|A|168
8BQX|1|2|A|169
8BQX|1|2|U|170
8BQX|1|2|A|171

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A