3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AAUA*UUCU
Length
8 nucleotides
Bulged bases
8BQX|1|2|A|1346, 8BQX|1|2|U|1347
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BQX_068 not in the Motif Atlas
Homologous match to IL_4V88_456
Geometric discrepancy: 0.1971
The information below is about IL_4V88_456
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_76458.1
Basepair signature
cWW-cSH-L-cWW
Number of instances in this motif group
2

Unit IDs

8BQX|1|2|A|1345
8BQX|1|2|A|1346
8BQX|1|2|U|1347
8BQX|1|2|A|1348
*
8BQX|1|2|U|1377
8BQX|1|2|U|1378
8BQX|1|2|C|1379
8BQX|1|2|U|1380

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
40S ribosomal protein S16-A
Chain J
40S ribosomal protein S20

Coloring options:


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