IL_8BQX_073

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_073 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.1452

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8BQX|1|2|C|1495
8BQX|1|2|U|1496
8BQX|1|2|U|1497
8BQX|1|2|G|1498
*
8BQX|1|2|C|1509
8BQX|1|2|U|1510
8BQX|1|2|U|1511
8BQX|1|2|G|1512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S19-A