IL_8BQX_075

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8BQX|1|2|C|1637, 8BQX|1|2|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_075 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1791

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8BQX|1|2|C|1636
8BQX|1|2|C|1637
8BQX|1|2|G|1638
*
8BQX|1|2|C|1764
8BQX|1|2|A|1765
8BQX|1|2|A|1766
8BQX|1|2|G|1767

Current chains

Chain 2

18S rRNA

Nearby chains

Chain e

40S ribosomal protein S26-B