IL_8BQX_086

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_086 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1854

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8BQX|1|2|A|1678
8BQX|1|2|G|1679
8BQX|1|2|G|1680
8BQX|1|2|A|1681
8BQX|1|2|U|1682
*
8BQX|1|2|A|1719
8BQX|1|2|G|1720
8BQX|1|2|A|1721
8BQX|1|2|A|1722
8BQX|1|2|U|1723

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A