IL_8BQX_118
3D structure
- PDB id
- 8BQX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8BQX|1|BQ|A|933, 8BQX|1|BQ|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQX_118 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1016
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BQX|1|BQ|G|805
8BQX|1|BQ|A|806
8BQX|1|BQ|A|807
8BQX|1|BQ|A|808
8BQX|1|BQ|G|809
*
8BQX|1|BQ|C|931
8BQX|1|BQ|U|932
8BQX|1|BQ|A|933
8BQX|1|BQ|G|934
8BQX|1|BQ|U|935
8BQX|1|BQ|A|936
8BQX|1|BQ|G|937
8BQX|1|BQ|C|938
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain BE
- 60S ribosomal protein L4-A
Coloring options: