3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GACACCACAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
8BQX|1|BQ|C|1196, 8BQX|1|BQ|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BQX_141 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.1003
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8BQX|1|BQ|G|1194
8BQX|1|BQ|A|1195
8BQX|1|BQ|C|1196
8BQX|1|BQ|A|1197
8BQX|1|BQ|C|1198
8BQX|1|BQ|C|1199
8BQX|1|BQ|A|1200
8BQX|1|BQ|C|1201
8BQX|1|BQ|A|1202
8BQX|1|BQ|A|1203
8BQX|1|BQ|A|1204
8BQX|1|BQ|A|1205
*
8BQX|1|BQ|U|1299
8BQX|1|BQ|G|1300
8BQX|1|BQ|A|1301
8BQX|1|BQ|A|1302
8BQX|1|BQ|A|1303
8BQX|1|BQ|A|1304
8BQX|1|BQ|U|1305
8BQX|1|BQ|G|1306
8BQX|1|BQ|G|1307
8BQX|1|BQ|A|1308
8BQX|1|BQ|U|1309
8BQX|1|BQ|G|1310
8BQX|1|BQ|G|1311
8BQX|1|BQ|C|1312
8BQX|1|BQ|G|1313
8BQX|1|BQ|C|1314

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AO
60S ribosomal protein L40-A
Chain AU
60S ribosomal protein L16-A
Chain BA
60S ribosomal protein L3
Chain BD
RPL10 isoform 1
Chain BK
60S ribosomal protein L33-A
Chain BO
60S ribosomal protein L7-A
Chain BR
5S ribosomal RNA; 5S rRNA

Coloring options:


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