IL_8BQX_146

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8BQX|1|BQ|G|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_146 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.1158

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

8BQX|1|BQ|C|1376
8BQX|1|BQ|G|1377
8BQX|1|BQ|U|1378
*
8BQX|1|BQ|A|1428
8BQX|1|BQ|G|1429
8BQX|1|BQ|U|1430
8BQX|1|BQ|G|1431

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L28

Chain BE

60S ribosomal protein L4-A

Chain BG

RPL32 isoform 1

Chain BS

5.8S ribosomal RNA; 5.8S rRNA