IL_8BQX_153

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_153 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.1619

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8BQX|1|BQ|G|1618
8BQX|1|BQ|A|1619
8BQX|1|BQ|U|1620
8BQX|1|BQ|A|1621
*
8BQX|1|BQ|U|1824
8BQX|1|BQ|G|1825
8BQX|1|BQ|C|1826

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AI

RPL38 isoform 1

Chain BS

5.8S ribosomal RNA; 5.8S rRNA