IL_8BQX_155

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

8BQX|1|BQ|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_155 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.2421

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8BQX|1|BQ|U|1627
8BQX|1|BQ|C|1628
8BQX|1|BQ|U|1629
8BQX|1|BQ|U|1630
8BQX|1|BQ|C|1631
*
8BQX|1|BQ|G|1811
8BQX|1|BQ|G|1812
8BQX|1|BQ|A|1813
8BQX|1|BQ|A|1814
8BQX|1|BQ|U|1815
8BQX|1|BQ|A|1816

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AN

60S ribosomal protein L27-A