IL_8BQX_161

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_161 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1628

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8BQX|1|BQ|U|1702
8BQX|1|BQ|U|1703
8BQX|1|BQ|A|1704
8BQX|1|BQ|U|1705
8BQX|1|BQ|C|1706
8BQX|1|BQ|A|1707
*
8BQX|1|BQ|U|1737
8BQX|1|BQ|C|1738
8BQX|1|BQ|U|1739
8BQX|1|BQ|U|1740
8BQX|1|BQ|A|1741
8BQX|1|BQ|U|1742
8BQX|1|BQ|G|1743

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BN

60S ribosomal protein L34-A