IL_8BQX_173

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_173 not in the Motif Atlas

Geometric match to IL_1M5K_004

Geometric discrepancy: 0.3252

The information below is about IL_1M5K_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8BQX|1|BQ|G|1994
8BQX|1|BQ|A|1995
8BQX|1|BQ|C|1996
*
8BQX|1|BQ|G|2025
8BQX|1|BQ|A|2026
8BQX|1|BQ|C|2027

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain x

Methionine aminopeptidase 1