IL_8BQX_182

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8BQX|1|BQ|A|2281, 8BQX|1|BQ|C|2287, 8BQX|1|BQ|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_182 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1135

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BQX|1|BQ|C|2277
8BQX|1|BQ|C|2278
8BQX|1|BQ|A|2279
8BQX|1|BQ|A|2280
8BQX|1|BQ|A|2281
8BQX|1|BQ|U|2282
8BQX|1|BQ|G|2283
8BQX|1|BQ|C|2284
8BQX|1|BQ|C|2285
8BQX|1|BQ|U|2286
8BQX|1|BQ|C|2287
8BQX|1|BQ|G|2288
*
8BQX|1|BQ|C|2304
8BQX|1|BQ|G|2305
8BQX|1|BQ|C|2306
8BQX|1|BQ|G|2307

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41-A