IL_8BQX_183

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_183 not in the Motif Atlas

Homologous match to IL_5TBW_091

Geometric discrepancy: 0.1029

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BQX|1|BQ|G|2391
8BQX|1|BQ|C|2392
8BQX|1|BQ|G|2393
8BQX|1|BQ|G|2394
*
8BQX|1|BQ|U|2986
8BQX|1|BQ|A|2987
8BQX|1|BQ|C|2988

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L16-A

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3