IL_8BQX_192

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_192 not in the Motif Atlas

Homologous match to IL_8C3A_108

Geometric discrepancy: 0.1298

The information below is about IL_8C3A_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8BQX|1|BQ|C|2666
8BQX|1|BQ|A|2667
8BQX|1|BQ|U|2668
*
8BQX|1|BQ|A|2686
8BQX|1|BQ|G|2687
8BQX|1|BQ|U|2688
8BQX|1|BQ|A|2689
8BQX|1|BQ|G|2690

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

RPL11B isoform 1

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A

Chain BR

5S ribosomal RNA; 5S rRNA