IL_8BQX_193

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_193 not in the Motif Atlas

Homologous match to IL_8C3A_109

Geometric discrepancy: 0.1247

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8BQX|1|BQ|U|2718
8BQX|1|BQ|U|2719
8BQX|1|BQ|G|2720
8BQX|1|BQ|A|2721
*
8BQX|1|BQ|U|2735
8BQX|1|BQ|A|2736
8BQX|1|BQ|C|2737
8BQX|1|BQ|A|2738

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AV

60S ribosomal protein L29

Chain BB

60S ribosomal protein L18-A

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A