IL_8BQX_201

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8BQX|1|BQ|G|2945, 8BQX|1|BQ|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_201 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0983

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BQX|1|BQ|C|2879
8BQX|1|BQ|U|2880
8BQX|1|BQ|C|2881
*
8BQX|1|BQ|G|2943
8BQX|1|BQ|U|2944
8BQX|1|BQ|G|2945
8BQX|1|BQ|A|2946
8BQX|1|BQ|G|2947

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3