IL_8BQX_213

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8BQX|1|BQ|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_213 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1141

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8BQX|1|BQ|A|3103
8BQX|1|BQ|U|3104
8BQX|1|BQ|U|3105
8BQX|1|BQ|A|3106
8BQX|1|BQ|U|3107
*
8BQX|1|BQ|A|3127
8BQX|1|BQ|G|3128
8BQX|1|BQ|A|3129
8BQX|1|BQ|A|3130
8BQX|1|BQ|U|3131

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L40-A

Chain AU

60S ribosomal protein L16-A