IL_8BQX_230

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8BQX|1|BQ|U|3354, 8BQX|1|BQ|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_230 not in the Motif Atlas

Geometric match to IL_5TBW_136

Geometric discrepancy: 0.3099

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BQX|1|BQ|C|3349
8BQX|1|BQ|C|3350
*
8BQX|1|BQ|G|3353
8BQX|1|BQ|U|3354
8BQX|1|BQ|U|3355
8BQX|1|BQ|G|3356

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain V

40S ribosomal protein S8-A