IL_8BQX_258

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQX_258 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.3317

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BQX|1|BQ|C|3162
8BQX|1|BQ|A|3163
8BQX|1|BQ|C|3164
8BQX|1|BQ|A|3165
8BQX|1|BQ|C|3166
*
8BQX|1|BQ|G|3284
8BQX|1|BQ|C|3285
8BQX|1|BQ|G|3286
8BQX|1|BQ|U|3287
8BQX|1|BQ|G|3288

Current chains

Chain BQ

25S rRNA

Nearby chains