IL_8BR8_001

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCCG*CCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_001 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.3455

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

8BR8|1|LD|C|7
8BR8|1|LD|C|8
8BR8|1|LD|C|9
8BR8|1|LD|G|10
*
8BR8|1|Lt|C|364
8BR8|1|Lt|C|365
8BR8|1|Lt|G|366

Current chains

Chain LD

5.8S rRNA

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LQ

Ribosomal protein L17