IL_8BR8_004
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GCG*CGCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_004 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.2911
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BR8|1|LD|G|32
8BR8|1|LD|C|33
8BR8|1|LD|G|34
*
8BR8|1|Lt|C|280
8BR8|1|Lt|G|281
8BR8|1|Lt|C|282
8BR8|1|Lt|C|283
Current chains
- Chain LD
- 5.8S rRNA
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LM
- 60S ribosomal protein L13
- Chain LO
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
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