IL_8BR8_005
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GCGCGGCGGAGCGCGAGACGC*GAUCC
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_005 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.1334
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8BR8|1|LD|G|45
8BR8|1|LD|C|46
8BR8|1|LD|G|47
8BR8|1|LD|C|48
8BR8|1|LD|G|49
8BR8|1|LD|G|50
8BR8|1|LD|C|51
8BR8|1|LD|G|52
8BR8|1|LD|G|53
8BR8|1|LD|A|54
8BR8|1|LD|G|55
8BR8|1|LD|C|56
8BR8|1|LD|G|57
8BR8|1|LD|C|58
8BR8|1|LD|G|59
8BR8|1|LD|A|60
8BR8|1|LD|G|61
8BR8|1|LD|A|62
8BR8|1|LD|C|63
8BR8|1|LD|G|64
8BR8|1|LD|C|65
*
8BR8|1|LD|G|96
8BR8|1|LD|A|97
8BR8|1|LD|U|98
8BR8|1|LD|C|99
8BR8|1|LD|C|100
Current chains
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain LG
- Ribosomal protein L39
- Chain LY
- Ribosomal protein L23A
- Chain Li
- Ribosomal protein L29
- Chain Lk
- Ribosomal protein L37
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
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