IL_8BR8_008

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UA*UCA

Length

5 nucleotides

Bulged bases

8BR8|1|LE|C|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BR8_008 not in the Motif Atlas

Homologous match to IL_5TBW_372

Geometric discrepancy: 0.1413

The information below is about IL_5TBW_372

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BR8|1|LE|U|15
8BR8|1|LE|A|16
*
8BR8|1|LE|U|63
8BR8|1|LE|C|64
8BR8|1|LE|A|65

Current chains

Chain LE

5S rRNA

Nearby chains

Chain LF

Ribosomal protein L5

Chain LK

Ribosomal protein L10

Chain LL

Ribosomal protein L11

Chain Lt

Large subunit ribosomal RNA; LSU rRNA