IL_8BR8_012
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GCCAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BR8_012 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2216
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8BR8|1|LE|G|72
8BR8|1|LE|C|73
8BR8|1|LE|C|74
8BR8|1|LE|A|75
8BR8|1|LE|G|76
8BR8|1|LE|U|77
8BR8|1|LE|A|78
8BR8|1|LE|C|79
*
8BR8|1|LE|G|99
8BR8|1|LE|G|100
8BR8|1|LE|A|101
8BR8|1|LE|A|102
8BR8|1|LE|C|103
8BR8|1|LE|A|104
8BR8|1|LE|C|105
Current chains
- Chain LE
- 5S rRNA
Nearby chains
- Chain LF
- Ribosomal protein L5
- Chain LH
- Ribosomal protein L7
- Chain LK
- Ribosomal protein L10
- Chain LT
- 60S ribosomal protein L18a
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
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